miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|152114644|gb|EV437371.1|EV437371 GAATCCTGGCTTCTTGGAAGCGCTTGCCTAGACGAGACACAGTGCATAAAAACAACTTTTGGGGGACAGGTATGTTTTTC
TTGCAGCTGCGGTTGTAAGGTCTTGGCAAGACAAGCAGTGTGGCCAGAATTTTGAACTTCTGATGAGTGTGTAACGCAAA
GGACCATGTACATTTTTGATGAAAGGTCCTCAAAATGAGAGCACACGAGGAGGTTGCTGTGAACTTTTAAGTGGCCCTAC
TGCGCAGAAGCATTCAGATGTCACTTGATGATCTGTAAGGGGACTTGCTAATTTGGGAATGTTAGGAAATACACACGTCC
TTTTGACACGCTCCATCATTGGGTGGGTAATAAGGTATACAGATGACGTGTGCTTTTTCTTTTTTTTCTTCCCCACCTTC
AACCTCAATGGTATTCCTACAGGGAATGGATAACCATTTTAACTGTATTTTTTGCAGCCCATACCTTCTTGGGAATACAA
TTGTCTAACTTTTTATTTTTGGTCTGGCTGTTGTGGTGTGCAAAACCCTGTACATTGCTATTTTGCCACACTGCAACACC
TTACAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCAGAGGATTATATTCATCGAATTGGA
AGAACTGCCCGCAGTACCAAAACAGGCACAGCATACACTTTCTTTACACCTAATAACATAAAGCAAGTGAGCGACCTTAT
CTCTGTGCTTC




Most similar to sp|Q5R4I9|DDX5_PONAB

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp.
           japonica GN=YAB6 PE=2 SV=1
          Length = 207

 Score =  120 bits (302), Expect(2) = 6e-27
 Identities = 55/57 (96%), Positives = 56/57 (98%)
 Frame = +2

Query: 401 AEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSSPRLQDH 571
           AEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHS+P LQDH
Sbjct: 8   AEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDH 64



 Score = 21.6 bits (44), Expect(2) = 6e-27
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 553 PQITRSHHHHLRKEAQS 603
           P +   HHHHL++   S
Sbjct: 59  PALQDHHHHHLQESGLS 75


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5
           OS=Pongo abelii GN=DDX5 PE=2 SV=1
          Length = 614

 Score =  114 bits (285), Expect = 7e-25
 Identities = 55/55 (100%), Positives = 55/55 (100%)
 Frame = +2

Query: 566 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVL 730
           DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVL
Sbjct: 406 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVL 460